miRBase entry: cfa-mir-8908d-1

Stem-loop cfa-mir-8908d-1


Accession
MI0028036
Description
Canis familiaris cfa-mir-8908d-1 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

cuggccagauccucuccugcgggccacgcugaguuuagggcccuacccagaaaggugcugaugaggcaggauacagauuAUUAGCGCCUGACUGAGUGGGGUCccaaucaguaacagaacugcccguggcguccuucagcuca
..(((..((....(.((.((((((...(((((.....(((((((((.(((..((((((((((((....(....)...))))))))))))..))).)))))))))...))))).........)))))))).)....)).)))..

Structure
cu   ca  uccu u  u      ------cac     guuua         c   aa            ggca g 
  ggc  ga    c cc gcgggc         gcuga     gggcccuac cag  aggugcugauga    g a
  |||  ||    | || ||||||         |||||     ||||||||| |||  ||||||||||||    |  
  ucg  cu    g gg ugcccg         ugacu     cCUGGGGUG GUC  UCCGCGAUUAuu    c u
ac   -a  uccu c  -      ucaagacaa     --aac         A   AG            -aga a 


Annotation confidence Not enough data
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Genome context
chrX: 114688835-114688977 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from cfa-mir-8908d-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-8908d

Accession MIMAT0034420
Description Canis familiaris cfa-miR-8908d mature miRNA
Sequence 80 - AUUAGCGCCUGACUGAGUGGGGUC - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545