miRBase entry: cfa-mir-8908a-3

Stem-loop cfa-mir-8908a-3


Accession
MI0028038
Description
Canis familiaris cfa-mir-8908a-3 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

cccugaacaauauccgucuucccgcguaacguguguagugcucUGCUGAGGAAGGUGCUCAUUGCAUUcauucauaagagUAAUUAGGACCUCCCUGAGCGGAGUaaugcucaccugaaguacgucugcggugucuucuggagcg
.((.(((..(((.((((......(((((..(((.(((.(((((((((.(((.((((.((.(((((..((........))))))).)).)))).))).))))))))).))).)))......)))))..))))))).))).))....

Structure
---c  u   ca   u    cuuccc     ----ac   u   g         G   A    G  C     AU  auu 
    cc gaa  aua ccgu      gcgua      gug gua ugcucUGCU AGG AGGU CU AUUGC  Uc   c
    || |||  ||| ||||      |||||      ||| ||| ||||||||| ||| |||| || |||||  ||    
    gg cuu  ugu ggcg      ugcau      cac cgu aUGAGGCGA UCC UCCA GA UAAUg  ag   a
gcga  u   -c   -    ----uc     gaaguc   u   a         G   C    G  U     --  aau 


Annotation confidence Not enough data
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Genome context
chrX: 114689771-114689915 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from cfa-mir-8908a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-8908a-5p

Accession MIMAT0034428
Description Canis familiaris cfa-miR-8908a-5p mature miRNA
Sequence 44 - UGCUGAGGAAGGUGCUCAUUGCAUU - 68
Evidence experimental
Illumina [1]

Mature cfa-miR-8908a-3p

Accession MIMAT0034429
Description Canis familiaris cfa-miR-8908a-3p mature miRNA
Sequence 81 - UAAUUAGGACCUCCCUGAGCGGAGU - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545