miRBase entry: eca-mir-8950

Stem-loop eca-mir-8950


Accession
MI0028097
Description
Equus caballus eca-mir-8950 precursor miRNA


Sequence

19 reads, 3 reads per million, 1 experiments
uucccggcucuacugaccuuugggugcuugcuuuggguagUGAGAGCUCUCAUUUGUCCUGGGGUaguugcagguuuauaggcuaccccagucuucagauacaugaggccuuuuugcucuguggucccauaguccuguagaugug
......(((((((.(((...((((.(((......((((((.(((.((.(((((.(((((((((((((((...........)))))))))))......)))).)))))))))).))))))...)))))))..)))..))))).)).

Structure
uucccg  -     -u   cuu    u   ugcuuu      U   A  U     U    ------           gcag 
      gc ucuac  gac   uggg gcu      ggguag GAG GC CUCAU UGUC      CUGGGGUaguu    g
      || |||||  |||   |||| |||      |||||| ||| || ||||| ||||      |||||||||||    u
      ug agaug  cug   accc ugg      cucguu uuc cg gagua auag      gaccccaucgg    u
-----g  u     uc   -au    -   ---ugu      u   -  -     c    acuucu           auau 


Annotation confidence Not enough data
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Genome context
chr23: 49691515-49691659 [-]

Database links

Mature eca-miR-8950

Accession MIMAT0034479
Description Equus caballus eca-miR-8950 mature miRNA
Sequence 41 - UGAGAGCUCUCAUUUGUCCUGGGGU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545