miRBase entry: eca-mir-8966

Stem-loop eca-mir-8966


Accession
MI0028120
Description
Equus caballus eca-mir-8966 precursor miRNA


Sequence

3 reads, 0 reads per million, 1 experiments
cuggguuucagccuugggguaucuuuuggaagcuugggaaagcaagaguugggcuuucacccccuaaggAGGGGACCCUCUCUGCCCUcuccuugcuccaugccaaggcugccugagcuccca
..(((((((((((((((.(.......((((.((..((((..(((.(((..(((...((.(((((...)).)))))))).))))))..)).))..))))))).)))))))))...))))))...

Structure
-cu      ---         g uaucuuu    a  uu  -  aa   a   uu   cuu  a   -  u 
   ggguuu   cagccuugg g       ugga gc  gg ga  gca gag  ggg   uc ccc cc  
   ||||||   ||||||||| |       |||| ||  || ||  ||| |||  |||   || ||| || a
   cucgag   gucggaacc u       accu cg  cc cU  CGU CUC  CCC   AG GGG gg  
acc      ucc         g -------    -  uu  u  CC   -   -U   ---  -   A  a 


Annotation confidence Not enough data
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Genome context
chr22: 20479829-20479951 [-]

Database links

Mature eca-miR-8966

Accession MIMAT0034501
Description Equus caballus eca-miR-8966 mature miRNA
Sequence 70 - AGGGGACCCUCUCUGCCCU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545