miRBase entry: eca-mir-8971

Stem-loop eca-mir-8971


Accession
MI0028127
Description
Equus caballus eca-mir-8971 precursor miRNA


Sequence

210 reads, 5 reads per million, 1 experiments
agaguguccugaguguguacugugcgggcguggugcugcgugcagacauucucaucuauucauucagccagagugUCCUGAGUGUGUACUGUGCGGGCGUgguccuggacgcugggugcagacguccucggggga
....(.(((((((.((((.((((((.(((((((((((.(((((((((((.((((......(((((.....)))))...)))).)))).)))))))))))....))...)))))..))))))))).)))))))).)

Structure
agag g       u -   a      -g     ---  ----    g       -    u    ucuauu     a 
    u uccugag g ugu cugugc  ggcgu   gg    ugcu cgugcag acau cuca      cauuc g
    | ||||||| | ||| ||||||  |||||   ||    |||| ||||||| |||| ||||      ||||| c
    a ggggcuc c gca gacgug  ucgca   cc    GCGG GCGUGUC UGUG GAGU      gugag c
---- g       - u   -      gg     ggu  uggU    -       A    U    ---CCU     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 93960446-93960580 [+]

Database links

Mature eca-miR-8971

Accession MIMAT0034508
Description Equus caballus eca-miR-8971 mature miRNA
Sequence 76 - UCCUGAGUGUGUACUGUGCGGGCGU - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545