miRBase entry: eca-mir-9003

Stem-loop eca-mir-9003


Accession
MI0028163
Description
Equus caballus eca-mir-9003 precursor miRNA


Sequence

109 reads, 10 reads per million, 1 experiments
ccaggugauagaaggaggcuuucgcuucgcucccacugugGCCCACUCUGCUUUGAUGCUUcuaaguuuuagaaguccaagcacccacuucagggugugcaagucaguggagagguggagcugagcgcugcgugggu
(((.((.........((((((..(((((((((((((((..((.((((((((((.(..((((((((...))))))))).)))).........)))))).))....)))))).)).))))))).)))).)))).)))..

Structure
--   g  gauagaagg  -    uc       -  -      --ug  C      ---------    U AU        g 
  cca gu         ag gcuu  gcuucgc uc ccacug    GC CACUCU         GCUU G  GCUUcuaa  
  ||| ||         || ||||  ||||||| || ||||||    || ||||||         |||| |  |||||||| u
  ggu cg         uc cgag  cgaggug ag ggugac    cg guggga         cgaa c  ugaagauu  
ug   g  ---------  g    -u       g  a      ugaa  u      cuucaccca    c --        u 


Annotation confidence Not enough data
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Genome context
chr8: 3661123-3661259 [+]

Database links

Mature eca-miR-9003

Accession MIMAT0034543
Description Equus caballus eca-miR-9003 mature miRNA
Sequence 41 - GCCCACUCUGCUUUGAUGCUU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545