miRBase entry: eca-mir-1249

Stem-loop eca-mir-1249


Accession
MI0028185
Description
Equus caballus eca-mir-1249 precursor miRNA
Gene family
MIPF0000667; mir-1249

Literature search
1 open access papers mention eca-mir-1249
(1 sentences)

Sequence

27 reads, 4 reads per million, 1 experiments
gucccagcucaucuuguuccucagauucuuguuugcguggggaggagggaggagaugggccaaguucccucugccuggAACGCCCUUCCCCCCCUUCUUCAccuggcgaacuccuacucguccuucaagacccagcucaag
.....((((..(((((..............((((((..(((((((((((.((.((.((((...(((((........))))))))).)).))))))))))).))..))))))..............)))))...))))....

Structure
guccc    -ca     uuccucagauucuu      gu  -         a  a  u    caa     cuc 
     agcu   ucuug              guuugc  gg ggaggaggg gg ga gggc   guucc   u
     ||||   |||||              ||||||  || ||||||||| || || ||||   |||||    
     ucga   agaac              caagcg  cc CUUCUUCCC CC CU CCCG   CAAgg   g
-gaac    ccc     uuccugcucauccu      gu  A         -  C  U    ---     ucc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr28: 41193631-41193771 [-]

Database links

Mature eca-miR-1249

Accession MIMAT0034563
Description Equus caballus eca-miR-1249 mature miRNA
Sequence 79 - AACGCCCUUCCCCCCCUUCUUCA - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545