miRBase entry: eca-mir-9034

Stem-loop eca-mir-9034


Accession
MI0028198
Description
Equus caballus eca-mir-9034 precursor miRNA


Sequence

105 reads, 14 reads per million, 1 experiments
ggccaggugguuaaguucaugugcucugcuucgguagccugggguuuauggguucagaugcuggguguggaccuacacaCCACUCAUUAAGCCGUACUGUGGCagugucccacauagaagaacuagaaugaccuacaacuagg
....((((.(((.(((((((((((.(((((.((((.....(.(((((((((((.(((...)))((((((......))))))))))).)))))).))))).))))).)...)))))....)))))..))).)))).........

Structure
-----ggcc    g   -a     ----     --- u     u    agccu g      -     ucagaugcug      ga 
         aggu guu  aguuc    augug   c cugcu cggu     g gguuua ugggu          ggugug  c
         |||| |||  |||||    |||||   | ||||| ||||     | |||||| |||||          ||||||   
         ucca uaa  ucaag    uacac   g gaCGG GUCA     U CCGAAU ACUCA          CCacac  c
ggaucaaca    g   ga     aaga     ccu u     U    ----- G      U     ----------      au 


Annotation confidence Not enough data
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Genome context
chr25: 39205787-39205929 [+]

Database links

Mature eca-miR-9034

Accession MIMAT0034576
Description Equus caballus eca-miR-9034 mature miRNA
Sequence 80 - CCACUCAUUAAGCCGUACUGUGGC - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545