miRBase entry: eca-mir-9049

Stem-loop eca-mir-9049


Accession
MI0028219
Description
Equus caballus eca-mir-9049 precursor miRNA


Sequence

6 reads, 1 reads per million, 1 experiments
caagagaugggaggucaggaguuuuaaaggUUGCAAGGAAUGCAGCUGCUUGUAGggagggggagccuguggccuugcuaaguggaguuuuccuagcagccuguauuugggcuggugaguuugcu
........(.(((.(((..(((((...(((((((.(((((.((..((((((((((((..(((...)))....)))))).)))))).)).))))).)))))))......)))))..))).))).).

Structure
caagagau g   g   gg     ---uaa       A     U  AG      -      --ag   g 
        g gag uca  aguuu      aggUUGC AGGAA GC  CUGCUU GUAGgg    ggg  
        | ||| |||  |||||      ||||||| ||||| ||  |||||| ||||||    ||| a
        c uuu agu  ucggg      uccgacg uccuu ug  ggugaa cguucc    ucc  
-------u g   g   gg     uuuaug       a     u  -a      u      ggug   g 


Annotation confidence Not enough data
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Genome context
chr1: 60795287-60795411 [+]

Database links

Mature eca-miR-9049

Accession MIMAT0034593
Description Equus caballus eca-miR-9049 mature miRNA
Sequence 31 - UUGCAAGGAAUGCAGCUGCUUGUAG - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545