miRBase entry: eca-mir-9054

Stem-loop eca-mir-9054


Accession
MI0028225
Description
Equus caballus eca-mir-9054 precursor miRNA


Sequence

446 reads, 20 reads per million, 1 experiments
ccacugaguugugccuauucauugccaaggUUCUUGUGUCUUUUUGGGCAGGUGGcugggugcgcacaacccacagagauggggcagggcuauauggggauuuaugugcagaauuuaauaaccuu
....((((((.(((.(((..(((.(((.(((.(((((((((((.((((...(((((.....)).)))..)))).))))))...))))))))...))).)))..))).))).))))))........

Structure
----ccac      g   c   uc   g   --a   U     ---      U    CAG   -  u 
        ugaguu ugc uau  auu cca   ggU CUUGU   GUCUUU UGGG   GUG Gc g
        |||||| ||| |||  ||| |||   ||| |||||   |||||| ||||   ||| || g
        auuuaa acg gua  uag ggu   ucg ggacg   uagaga accc   cac cg g
uuccaaua      g   u   uu   g   aua   -     ggg      c    -aa   g  u 


Annotation confidence Not enough data
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Genome context
chr1: 98817805-98817929 [-]

Database links

Mature eca-miR-9054

Accession MIMAT0034598
Description Equus caballus eca-miR-9054 mature miRNA
Sequence 31 - UUCUUGUGUCUUUUUGGGCAGGUGG - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545