miRBase entry: eca-mir-9052-2

Stem-loop eca-mir-9052-2


Accession
MI0028229
Description
Equus caballus eca-mir-9052-2 precursor miRNA
Gene family
MIPF0002048; mir-9052


Sequence

761 reads, 113 reads per million, 1 experiments
agccgugacucuccccaguggucucCCGAGACGCCGUCAGCAUGAGCCUCucggcagcgguggcugaggggccgcagcguguuggacucacugccgcgcuuggagacgaggagga
.........(((((....(.((((((.(((.(((.(.(((..((((..((.(((((((.((((((....)))))).)).))))))))))))))).)))))))))))).)))))).

Structure
agccgugac     ccag g      C   A   C U   CA    CC  u     -  g      g 
         ucucc    u gucucC GAG CGC G CAG  UGAG  UC cggca gc guggcu a
         |||||    | |||||| ||| ||| | |||  ||||  || ||||| || ||||||  
         ggagg    a cagagg uuc gcg c guc  acuc  ag guugu cg cgccgg g
--------a     ---- g      -   -   c -   --    --  -     g  a      g 


Annotation confidence Not enough data
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Genome context
chr1: 38525294-38525408 [-]

Database links

Mature eca-miR-9052

Accession MIMAT0034596
Description Equus caballus eca-miR-9052 mature miRNA
Sequence 26 - CCGAGACGCCGUCAGCAUGAGCCUC - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545