miRBase entry: eca-mir-3548

Stem-loop eca-mir-3548


Accession
MI0028231
Description
Equus caballus eca-mir-3548 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

101 reads, 13 reads per million, 1 experiments
cuccccagcgggcggcagugggucaccuuugaacaucguuaccagacaguguuagagucgagccgagaaaucCAGCACUGUCCGGUAAGAUGCCcacaggggcccaggcgccucagccugaggacgugg
.(((.(((((((((.(..((((((.(((.((..((((.(((((.(((((((((.((.((.......))..)).))))))))).)))))))))..)).)))))))))).)))))..).))).))).....

Structure
----c   c   - --     g ag      a   u  aa    g     a         a  -g  ga 
     ucc cag c  gggcg c  uggguc ccu ug  cauc uuacc gacaguguu ga  uc  g
     ||| ||| |  ||||| |  |||||| ||| ||  |||| ||||| ||||||||| ||  ||  c
     agg guc g  uccgc g  acccgg gga ac  GUAG AAUGG CUGUCACGA cu  ag  c
ggugc   a   c ac     g --      -   c  CC    -     C         C  aa  ag 


Annotation confidence High
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Genome context
chr2: 48454387-48454515 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from eca-mir-3548
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-3548

Accession MIMAT0034603
Description Equus caballus eca-miR-3548 mature miRNA
Sequence 73 - CAGCACUGUCCGGUAAGAUGCC - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545