miRBase entry: eca-mir-9093

Stem-loop eca-mir-9093


Accession
MI0028266
Description
Equus caballus eca-mir-9093 precursor miRNA


Sequence

6 reads, 1 reads per million, 1 experiments
cagaaagucggcguugccuaggaacaagaucuucugggagCUGUAGUCCAUGUCCCCAGGCCCugggaguguccugcgcuggagguggggacuacaccucucagaaggcucugcagcagcgcguggggcaucugagggcac
((((...((((((((((...(((....(.(((((((((((.((((((((....((((((((...((((...)))))).)))).))...)))))))).)))))))))))))))...))))))).)))....)))).......

Structure
-------    -aag   -       cua   acaa a           C        AUGU  -    -  CCu    g 
       caga    ucg gcguugc   gga    g ucuucugggag UGUAGUCC    CC CCAG GC   ggga  
       ||||    ||| |||||||   |||    | ||||||||||| ||||||||    || |||| ||   |||| u
       gucu    ggu cgcgacg   ucu    c ggaagacucuc acaucagg    gg gguc cg   uccu  
cacggga    acgg   g       acg   ---- -           c        -ggu  a    g  ---    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 27647422-27647562 [+]

Database links

Mature eca-miR-9093

Accession MIMAT0034638
Description Equus caballus eca-miR-9093 mature miRNA
Sequence 41 - CUGUAGUCCAUGUCCCCAGGCCC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545