miRBase entry: eca-mir-3065

Stem-loop eca-mir-3065


Accession
MI0028288
Description
Equus caballus eca-mir-3065 precursor miRNA
Gene family
MIPF0001105; mir-3065


Sequence

62 reads, 1 reads per million, 1 experiments
caggucaggaggcuggcagcugcccucuucaacaaaaucacugaugcuggaguugcgugugucaucacUCAGCACCAGGAUAUUGUUGGGGaggacggcccgugcggcggcuggggcuggc
((((((((....)))))..))).((((((((((((.(((.(((.(((((.(((...(((...))).)))))))).)))))).)))))))))))).((((((..((....))..))))))..

Structure
----caggucaggaggcuggcagcugc            a   a   a     g   ugc   u 
                           ccucuucaacaa auc cug ugcug agu   gug  
                           |||||||||||| ||| ||| ||||| |||   ||| g
                           ggaGGGGUUGUU UAG GAC ACGAC Uca   uac  
cggucggggucggcggcgugcccggca            A   -   C     -   --c   u 


Annotation confidence Not enough data
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Genome context
chr11: 1976383-1976503 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-3065
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-3065

Accession MIMAT0034658
Description Equus caballus eca-miR-3065 mature miRNA
Sequence 69 - UCAGCACCAGGAUAUUGUUGGGG - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545