miRBase entry: eca-mir-9115

Stem-loop eca-mir-9115


Accession
MI0028295
Description
Equus caballus eca-mir-9115 precursor miRNA


Sequence

11 reads, 2 reads per million, 1 experiments
ugcugggaguggaguggggcggggggggugucagggcgcgACGUGAGAACUGAAGUGCAGGGACccgggcuccagggcccugucccuccaccuuccugagcucuguccaggcccuggguucuccuaccucccuuugggcacca
((((.((((.(((....((..(((((((..(((((((..((((.(((..(.((((((.((((((..(((((....))))).)))))).)).))))..)..)))))))...))))))).))))))).))))))))).))))...

Structure
---    g    u   gugg  cg       ug       -gc    U   AA -U    -  C      cc     c 
   ugcu ggag gga    gg  ggggggg  ucagggc   gACG GAG  C  GAAG UG AGGGAC  gggcu c
   |||| |||| |||    ||  |||||||  |||||||   |||| |||  |  |||| || ||||||  |||||  
   acgg uuuc ccu    cc  uccucuu  ggucccg   cugu cuc  g  cuuc ac ucccug  cccgg a
acc    g    -   ----  -a       -g       gac    -   ga uc    c  c      -u     g 


Annotation confidence Not enough data
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Genome context
chr12: 20718806-20718948 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-9115
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9115

Accession MIMAT0034664
Description Equus caballus eca-miR-9115 mature miRNA
Sequence 41 - ACGUGAGAACUGAAGUGCAGGGAC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545