miRBase entry: eca-mir-9119

Stem-loop eca-mir-9119


Accession
MI0028299
Description
Equus caballus eca-mir-9119 precursor miRNA


Sequence

6 reads, 1 reads per million, 1 experiments
ccacaugugggaaggggcgagugacagugucgcagggacccaagcaguagucuggaccuugucagcugcaagguCCGACCUGCUUUGUGACUUuagcaagaugcucacccucucugagccuguguccucaucu
.((((.((.(((.((((.(((((...((((((((.......((((((..(((.(((((((((.....))))))))))))))))))))))))....))....))))).)))).)))..)).)))).........

Structure
--------c    u  -g   a    c     -aca  ----      gggaccc      ua   u         c 
         caca gu  gga gggg gagug    gu    gucgca       aagcag  guc ggaccuugu a
         |||| ||  ||| |||| |||||    ||    ||||||       ||||||  ||| ||||||||| g
         gugu cg  ucu uccc cucgu    cg    CAGUGU       UUCGUC  CAG CCuggaacg c
ucuacuccu    c  ag   c    a     agaa  auUU      -------      --   -         u 


Annotation confidence Not enough data
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Genome context
chr12: 25043170-25043302 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-9119
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9119

Accession MIMAT0034668
Description Equus caballus eca-miR-9119 mature miRNA
Sequence 75 - CCGACCUGCUUUGUGACUU - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545