miRBase entry: eca-mir-9123

Stem-loop eca-mir-9123


Accession
MI0028304
Description
Equus caballus eca-mir-9123 precursor miRNA


Sequence

88 reads, 13 reads per million, 1 experiments
uaagcagguccccgugugggaccagcgugcgucuuccgucgcuguuccucugcucaagaagcgcgcgcgcgcgcgCGCGCCUUCUCAGAGGUACAGGAUCuugugagcuuccucagggaggacucugcuucccga
.((((((((((((.((.((((..(((.((((......(((.((((.((((((....((((((((((((....))))))).))))))))))).)))))))..)))).))))))))).)).)))).)))))).....

Structure
----u      -    -  g  u    cc   g    ucuucc   g    u      cuca     -       g 
     aagcag gucc cc ug ggga  agc ugcg      guc cugu ccucug    agaag cgcgcgc c
     |||||| |||| || || ||||  ||| ||||      ||| |||| ||||||    ||||| |||||||  
     uucguc cagg gg ac uccu  ucg gugu      UAG GACA GGAGAC    UCUUC GCGCgcg g
agccc      u    a  g  -    --   a    ----uC   -    U      ----     C       c 


Annotation confidence Not enough data
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Genome context
chr12: 2584516-2584650 [+]

Database links

Mature eca-miR-9123

Accession MIMAT0034673
Description Equus caballus eca-miR-9123 mature miRNA
Sequence 76 - CGCGCCUUCUCAGAGGUACAGGAUC - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545