miRBase entry: eca-mir-8908m

Stem-loop eca-mir-8908m


Accession
MI0028359
Description
Equus caballus eca-mir-8908m precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

56 reads, 8 reads per million, 1 experiments
uuggccucuucuccaccuugagacauuugugugcagggccCUGCCCAGAAUGGUGCUGACUACGUagauuaaguguagucagugccaucuggguagagcgaugcucaacaugaacaacguucggggugucuuucagagcaggugu
...((((.((((.(((((((((...((((((((((..((.(((((((((.((((((((((((((.........))))))))))))))))))))))).))..)))...))))))).....)))))))))......)))).))))..

Structure
uug    c    -----c         --aca       ---   gg  c         A              Uag 
   gccu uucu      caccuugag     uuugugu   gca  gc CUGCCCAGA UGGUGCUGACUACG   a
   |||| ||||      |||||||||     |||||||   |||  || ||||||||| ||||||||||||||   u
   ugga gaga      guggggcuu     aaguaca   cgu  cg gaugggucu accgugacugaugu   u
-ug    c    cuuucu         gcaac       acu   ag  a         -              gaa 


Annotation confidence High
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Genome context
chrX: 115862627-115862771 [-]
Clustered miRNAs
20 other miRNAs are < 10 kb from eca-mir-8908m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908m

Accession MIMAT0034717
Description Equus caballus eca-miR-8908m mature miRNA
Sequence 41 - CUGCCCAGAAUGGUGCUGACUACGU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545