miRBase entry: eca-mir-8908c-2

Stem-loop eca-mir-8908c-2


Accession
MI0028363
Description
Equus caballus eca-mir-8908c-2 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

17 reads, 3 reads per million, 1 experiments
ggacugggcagauccuccacccugagccaugcuguaugcagugcccugcccagaagguacuuaucacuuagccuacguguAAUUAGUACCUGUCCGGGUAGAGUAaugcucaagcagaccaucauuuuuggaggccuucugaccg
......((((((.((((((...(((....((((....(((.(((.((((((.(((((((((...(((.........))).....))))))).)).)))))).))).)))...)))).....)))....))))))...)))).)).

Structure
ggacug  -    --u      -ccc   -gcca    guau   g   c      a  -       --uau   uua 
      gg caga   ccucca    uga     ugcu    gca ugc cugccc ga agguacu     cac   g
      || ||||   ||||||    |||     ||||    ||| ||| |||||| || |||||||     |||   c
      cc gucu   ggaggu    acu     acga    cgu AUG GAUGGG CU UCCAUGA     gug   c
-----g  a    ucc      uuuu   accag    -acu   a   A      C  G       UUAAu   cau 


Annotation confidence Not enough data
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Genome context
chrX: 115864611-115864755 [-]
Clustered miRNAs
21 other miRNAs are < 10 kb from eca-mir-8908c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908c

Accession MIMAT0034696
Description Equus caballus eca-miR-8908c mature miRNA
Sequence 81 - AAUUAGUACCUGUCCGGGUAGAGUA - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545