miRBase entry: eca-mir-9166

Stem-loop eca-mir-9166


Accession
MI0028391
Description
Equus caballus eca-mir-9166 precursor miRNA


Sequence

33 reads, 5 reads per million, 1 experiments
cuagcugccuggagcgguuucucuuggguccuuuccuggcUUGCGUCUGAGGCUUGGGGGuaagggaggcgccucugcccucagcacuucccgugaugcugccugggcccugaccacugugcguggcaccugggu
((((.((((..(.(((((...((..((((((......(((..(((((.((((((.((((((((((......))).)))))))))).))).....))))).))).)))))).))..))))).)..)))).))))..

Structure
--    c    ug a     uuc  uu      uuuccu   UU     ----U   -   U       -   ga 
  cuag ugcc  g gcggu   uc  gggucc      ggc  GCGUC     GAG GCU GGGGGua agg  g
  |||| ||||  | |||||   ||  ||||||      |||  |||||     ||| ||| ||||||| |||   
  gguc acgg  c uguca   ag  cccggg      ccg  cguag     uuc cga cucccgu ucc  g
ug    c    ug g     -cc  -u      -----u   -u     ugccc   a   -       c   gc 


Annotation confidence Not enough data
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Genome context
chr16: 1415614-1415748 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-9166
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9166

Accession MIMAT0034744
Description Equus caballus eca-miR-9166 mature miRNA
Sequence 41 - UUGCGUCUGAGGCUUGGGGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545