miRBase entry: eca-mir-9170

Stem-loop eca-mir-9170


Accession
MI0028396
Description
Equus caballus eca-mir-9170 precursor miRNA


Sequence

7 reads, 1 reads per million, 1 experiments
gaguccugggccaucuagagaggcgguaguuacaggcaugggugucuuuggggucagucaggccugggUUUGCAUCCUGGCUCUCCCACUUauuagcugugugaucuugggcaaguuucuu
..((((.(((((.((....)))))....((((((((((((((((.....((((..(((((((..((......)).))))))))))))))))))..))).)))))))).)))).........

Structure
-------ga    u  gccaucuagagaggcggua      -   --       ucuuu    uc       cc  gg 
         gucc gg                   guuaca ggc  augggug     gggg  agucagg  ug  U
         |||| ||                   |||||| |||  |||||||     ||||  |||||||  ||   
         cggg uc                   uagugu ucg  uaUUCAC     CCUC  UCGGUCC  AC  U
uucuuugaa    u  -------------------      g   au       -----    --       -U  GU 


Annotation confidence Not enough data
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Genome context
chr16: 18046864-18046984 [-]

Database links

Mature eca-miR-9170

Accession MIMAT0034748
Description Equus caballus eca-miR-9170 mature miRNA
Sequence 69 - UUUGCAUCCUGGCUCUCCCACUU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545