miRBase entry: efu-mir-34c

Stem-loop efu-mir-34c


Accession
MI0028730
Description
Eptesicus fuscus efu-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

agucuaguuacuaggcaguguaguuagcugauugcuaauaguaccAAUCACUAACUACACGGCCAAGUAaaaagauuug
.((((..(((((.(((.((((((((((.((((((.((....)).)))))))))))))))).))).)))))..))))...

Structure
--a    ag     a   a          c      c  a 
   gucu  uuacu ggc guguaguuag ugauug ua u
   ||||  ||||| ||| |||||||||| |||||| ||  
   uaga  aAUGA CCG CACAUCAAUC ACUAAc au a
guu    aa     A   G          -      c  g 


Annotation confidence Not enough data
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Genome context
JH977889.1: 780248-780326 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-34c

Accession MIMAT0035046
Description Eptesicus fuscus efu-miR-34c mature miRNA
Sequence 46 - AAUCACUAACUACACGGCCAAGUA - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545