miRBase entry: efu-mir-9340

Stem-loop efu-mir-9340


Accession
MI0028798
Description
Eptesicus fuscus efu-mir-9340 precursor miRNA


Sequence

ggaaaugacaUCCGGAAUGGAGUGGAGAGGUGAGCgucaguaguucaagguccuuccuccuugaaauucuaggauuuccuucuugg
((((.....(((((((((((((.((((.(((((((.......)))))...)))))))))).....))))).)))))))).......

Structure
-------    augac    -     -----    U    A  ---     gu 
       ggaa     aUCC GGAAU     GGAG GGAG GG   UGAGC  c
       ||||     |||| |||||     |||| |||| ||   |||||  a
       ccuu     uagg ucuua     ccuc cuuc cu   acuug  g
gguucuu    -----    a     aaguu    -    -  gga     au 


Annotation confidence Not enough data
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Genome context
JH977628.1: 14069838-14069923 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-9340
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-9340

Accession MIMAT0035104
Description Eptesicus fuscus efu-miR-9340 mature miRNA
Sequence 11 - UCCGGAAUGGAGUGGAGAGGUGAGC - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545