miRBase entry: efu-mir-450

Stem-loop efu-mir-450


Accession
MI0028829
Description
Eptesicus fuscus efu-mir-450 precursor miRNA
Gene family
MIPF0000128; mir-450


Sequence

gcuaaacuauUUUUGCGAUGUGUUCCUAAUAUguaauauaaauguauugggaacauuuugcauucauaguuuuguau
((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).))..

Structure
--  u       UUU     U               aa 
  gc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
  || |||||||   ||||| |||||||||||||||  a
  ug uuugaua   acguu uacaaggguuaugua  u
ua  u       cuu     u               aa 


Annotation confidence Not enough data
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Genome context
JH977765.1: 658793-658869 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from efu-mir-450
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-450

Accession MIMAT0035128
Description Eptesicus fuscus efu-miR-450 mature miRNA
Sequence 11 - UUUUGCGAUGUGUUCCUAAUAU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545