miRBase entry: efu-mir-30c

Stem-loop efu-mir-30c


Accession
MI0028838
Description
Eptesicus fuscus efu-mir-30c precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

gccguaguguguguaaacauccuacacucucagcugugagcucaagguggCUGGGAGAGGGUUGUUUACUCCUucugccaugg
...((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))).....

Structure
--gcc    ugu u       u   aca         guga   c 
     guag   g guaaaca ccu   cucucagcu    gcu  
     ||||   | ||||||| |||   |||||||||    ||| a
     cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
gguac    uUC U       U   --A         ----   a 


Annotation confidence Not enough data
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Genome context
JH977676.1: 8259557-8259639 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-30c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-30c

Accession MIMAT0035135
Description Eptesicus fuscus efu-miR-30c mature miRNA
Sequence 51 - CUGGGAGAGGGUUGUUUACUCCU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545