miRBase entry: efu-mir-660

Stem-loop efu-mir-660


Accession
MI0028859
Description
Eptesicus fuscus efu-mir-660 precursor miRNA
Gene family
MIPF0000113; mir-188


Sequence

ccuucucccaUACCCAUUGCAUAUCGGAGUUGUgaauucucaaagcaccuccugugugcauggauuacaggaggguga
((((((.......((((.((((((.((((.(((...........))).)))).)))))))))).....))))))....

Structure
----      cccaUAC    U      C    U   gaau 
    ccuucu       CCAU GCAUAU GGAG UGU    u
    ||||||       |||| |||||| |||| |||    c
    ggagga       ggua cgugug ccuc acg    u
agug      --cauua    -      u    c   aaac 


Annotation confidence Not enough data
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Genome context
JH977797.1: 845067-845144 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from efu-mir-660
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-660

Accession MIMAT0035154
Description Eptesicus fuscus efu-miR-660 mature miRNA
Sequence 11 - UACCCAUUGCAUAUCGGAGUUGU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545