miRBase entry: efu-mir-15

Stem-loop efu-mir-15


Accession
MI0028900
Description
Eptesicus fuscus efu-mir-15 precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

uaaaguacugUAGCAGCACAUCAUGGUUUACAuacuauagucaagaugcgaaucauuauuugcugcucuagaaauuuaag
((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...))))..

Structure
--    gua   U       C  C       A   a  au 
  uaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
  ||||   ||| ||||||| || ||||||| ||| ||  g
  auuu   gau ucgucgu ua uacuaag gua ga  u
ga    aaa   c       u  u       c   -  ac 


Annotation confidence Not enough data
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Genome context
JH977627.1: 6222869-6222948 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-15
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-15

Accession MIMAT0035188
Description Eptesicus fuscus efu-miR-15 mature miRNA
Sequence 11 - UAGCAGCACAUCAUGGUUUACA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545