miRBase entry: sly-MIR9469

Stem-loop sly-MIR9469


Accession
MI0029101
Description
Solanum lycopersicum sly-MIR9469 precursor miRNA

Literature search
1 open access papers mention sly-MIR9469
(1 sentences)

Sequence

caaaagcuagcucaugaggagagguuugucaaguCCACAUAAGAAGACCGAAUUCccaucccucuaccgcugugggacaucuuaaugggaAUUCGGUCUUCUUAUGUGGACuugacaaaccucuccucaugaguuagcuuuug
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(.......).))))........))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
                                                          --------    u ua 
caaaagcuagcucaugaggagagguuugucaaguCCACAUAAGAAGACCGAAUUCcca        uccc c  c
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| |  c
guuuucgauugaguacuccucuccaaacaguuCAGGUGUAUUCUUCUGGCUUAagggu        aggg g  g
                                                          aauucuac    u uc 


Annotation confidence Not enough data
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Genome context
chr7: 58623979-58624121 [-]

Database links

Mature sly-miR9469-5p

Accession MIMAT0035435
Description Solanum lycopersicum sly-miR9469-5p mature miRNA
Sequence 35 - CCACAUAAGAAGACCGAAUUC - 55
Evidence experimental
Illumina [1]

Mature sly-miR9469-3p

Accession MIMAT0035436
Description Solanum lycopersicum sly-miR9469-3p mature miRNA
Sequence 91 - AUUCGGUCUUCUUAUGUGGAC - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739