miRBase entry: sly-MIR166c

Stem-loop sly-MIR166c


Accession
MI0029105
Description
Solanum lycopersicum sly-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
25 open access papers mention sly-MIR166c
(91 sentences)

Sequence

uguguguggugaguuugaggGGGAUGUUGUCUGGCUCGACAcaauuacucuauuguauguauuuaguuauucguuaucaagauugaugucgauaacgaauaaauuaaacacauauauacaagauguaaaaagggaguaaaggcgUCGGACCAGGCUUCAUUCCUCucaaacaauauucuacuuuuaca
((((.((((...((((((((((((((..((((((.(((((.(..(((((((..(((((((.(((((((((((((((((..(((....))))))))))))).))))))).)))))))((((...)))).....)))))))..).))))).))))))..))))))))))))))......))))...))))

Structure
    --u    ---uga              UU      C     A aa       --------------au       a       -          aa   u 
ugug   gugg      guuugaggGGGAUG  GUCUGG UCGAC c  uuacucu                uguaugu uuuaguu auucguuauc  gau g
||||   ||||      ||||||||||||||  |||||| ||||| |  |||||||                ||||||| ||||||| ||||||||||  |||  
acau   cauc      caaacuCUCCUUAC  CGGACC GGCUg g  aaugagg                auauaca aaauuaa uaagcaauag  cug a
    uuu    uuauaa              UU      A     c ga       gaaaaauguagaacau       c       a          --   u 


Annotation confidence Not enough data
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Genome context
chr1: 92621085-92621272 [-]

Database links

Mature sly-miR166c-5p

Accession MIMAT0035443
Description Solanum lycopersicum sly-miR166c-5p mature miRNA
Sequence 21 - GGGAUGUUGUCUGGCUCGACA - 41
Evidence experimental
Illumina [1]

Mature sly-miR166c-3p

Accession MIMAT0035444
Description Solanum lycopersicum sly-miR166c-3p mature miRNA
Sequence 145 - UCGGACCAGGCUUCAUUCCUC - 165
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739