Stem-loop sequence sly-MIR156d

Accession

MI0029109 (change log)

Description

Solanum lycopersicum miR156d stem-loop

Gene family

MIPF0000008; MIR156

Literature search

32 open access papers mention sly-MIR156d
(154 sentences)

Stem-loop

          --c    -       --aaaacaaag   c         -    -               cgu    u      -    uu 
5' cagaugc   uaaa aagggua           ggg ggugacaga agag agugagcacacaugg   uuuc ggcaug augu  a
   |||||||   |||| |||||||           ||| ||||||||| |||| |||||||||||||||   |||| |||||| ||||   
3' gucuaug   auuu uuucuau           ccc ccacugucu ucuc ucacucguguguauc   aaag ucguau uaua  u
          uau    c       cuccuuaacca   u         a    g               ---    u      a    ua 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr8: 51913686-51913852 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000791401_4081
• miRBase Tracker:MI0029109

Mature sequence sly-miR156d-5p

• Accession: MIMAT0035451
• Sequence: 35 - ugacagaagagagugagcac - 54
• Evidence: experimental; Illumina [1]

Mature sequence sly-miR156d-3p

• Accession: MIMAT0035452
• Sequence: 109 - gcucacugcucuaucugucacc - 130
• Evidence: experimental; Illumina [1]

References

1. PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).