miRBase entry: sly-MIR156d

Stem-loop sly-MIR156d


Accession
MI0029109
Description
Solanum lycopersicum sly-MIR156d precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
32 open access papers mention sly-MIR156d
(156 sentences)

Sequence

cagaugccuaaaaaggguaaaaacaaaggggcggUGACAGAAGAGAGUGAGCACacauggcguuuucuggcaugauguuuauauauauauaugcuugaaacuauguguGCUCACUGCUCUAUCUGUCACCucccaccaauuccucuaucuuucuuuauauguaucug
(((((((.(((((((((((.........(((.((((((((((((((((((((((((((((...((((.((((((((((......)))).)))))).))))))))))))))))))).)))).))))))))).)))...........))))))).))))...)))))))

Structure
       --c    -       --aaaacaaag   c         -    -               cgu    u      -    uu 
cagaugc   uaaa aagggua           ggg ggUGACAGA AGAG AGUGAGCACacaugg   uuuc ggcaug augu  a
|||||||   |||| |||||||           ||| ||||||||| |||| |||||||||||||||   |||| |||||| ||||   
gucuaug   auuu uuucuau           ccc CCACUGUCU UCUC UCACUCGuguguauc   aaag ucguau uaua  u
       uau    c       cuccuuaacca   u         A    G               ---    u      a    ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 51913686-51913852 [-]

Database links

Mature sly-miR156d-5p

Accession MIMAT0035451
Description Solanum lycopersicum sly-miR156d-5p mature miRNA
Sequence 35 - UGACAGAAGAGAGUGAGCAC - 54
Evidence experimental
Illumina [1]

Mature sly-miR156d-3p

Accession MIMAT0035452
Description Solanum lycopersicum sly-miR156d-3p mature miRNA
Sequence 109 - GCUCACUGCUCUAUCUGUCACC - 130
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739