Stem-loop sequence sly-MIR156e

Accession

MI0029110 (change log)

Description

Solanum lycopersicum miR156e stem-loop

Gene family

MIPF0000008; MIR156

Literature search

32 open access papers mention sly-MIR156e
(164 sentences)

Stem-loop

   u  u         -                    guu   uu     -    uu 
5'  gg ggugauaga agagagugagcacacauggu   uuc  gcaug augu  a
    || ||||||||| ||||||||||||||||||||   |||  ||||| ||||   
3'  cc ccacugucu ucucucauucguguguauca   aag  cguau uaua  u
   a  c         a                    ---   uu     a    ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr8: 51945235-51945339 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007BACA1_4081
• miRBase Tracker:MI0029110

Mature sequence sly-miR156e-5p

• Accession: MIMAT0035453
• Sequence: 7 - ugauagaagagagugagcac - 26
• Evidence: experimental; Illumina [1]

Mature sequence sly-miR156e-3p

• Accession: MIMAT0035454
• Sequence: 81 - gcuuacucucuaucugucacc - 101
• Evidence: experimental; Illumina [1]

References

1. PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).