Stem-loop sequence sly-MIR482d

AccessionMI0029113 (change log)
DescriptionSolanum lycopersicum miR482d stem-loop
Gene family MIPF0000403; MIR482
Literature search

21 open access papers mention sly-MIR482d
(263 sentences)

Stem-loop 
             -gagg    u    au uu    a           -        -----auug            u 
5' ggaaagggag     gauu ggga  c  uugg gugggugggau ggaaaaau         uauuuuuuuuuc a
   ||||||||||     |||| ||||  |  |||| ||||||||||| ||||||||         |||||||||||| a
3' ccuuuuccuc     cuga ccuu  g  aacc uacccaccuua ccuuuuua         guagaaaaaaag c
             auuua    -    cg -u    g           u        gaguuaaga            g
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (SL2.50; GCA_000188115.2) Overlapping transcripts
chr6: 37380095-37380240 [-]
intergenic
Clustered miRNAs
< 10kb from sly-MIR482d
sly-MIR482cchr6: 37388175-37388285 [-]
sly-MIR482bchr6: 37380417-37380541 [-]
sly-MIR482dchr6: 37380095-37380240 [-]
Database links

Mature sequence sly-miR482d-5p

Accession MIMAT0035459
Sequence

31 -  

ggagugggugggauggaaaaa

 - 51

Get sequence
Evidence experimental; Illumina [1]

Mature sequence sly-miR482d-3p

Accession MIMAT0035460
Sequence

98 -  

uuuccuauuccacccaugccaa

 - 119

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).