miRBase entry: sly-MIR9476

Stem-loop sly-MIR9476


Accession
MI0029118
Description
Solanum lycopersicum sly-MIR9476 precursor miRNA

Literature search
1 open access papers mention sly-MIR9476
(2 sentences)

Sequence

ccuguccaaaacugcuauuggUCUAGUCCUGCAUCUUUUUUUacauuuuuuccguuaucaaaaaauauaaAAAAAGAUGCAGGACUAGACCaauagcaggauggauugg
((.(((((...((((((((((((((((((((((((((((((((.(((((((........))))))).))))))))))))))))))))))))))))))))..))))).))

Structure
  u     aaa                                c       ccg 
cc gucca   cugcuauuggUCUAGUCCUGCAUCUUUUUUUa auuuuuu   u
|| |||||   |||||||||||||||||||||||||||||||| |||||||    
gg uaggu   gacgauaaCCAGAUCAGGACGUAGAAAAAaau uaaaaaa   u
  u     -ag                                a       cua 


Annotation confidence Not enough data
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Genome context
chr1: 88110498-88110606 [-]

Database links

Mature sly-miR9476-5p

Accession MIMAT0035469
Description Solanum lycopersicum sly-miR9476-5p mature miRNA
Sequence 22 - UCUAGUCCUGCAUCUUUUUUU - 42
Evidence experimental
Illumina [1]

Mature sly-miR9476-3p

Accession MIMAT0035470
Description Solanum lycopersicum sly-miR9476-3p mature miRNA
Sequence 71 - AAAAAGAUGCAGGACUAGACC - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739