Stem-loop sly-MIR9477

Accession

MI0029119

Description

Solanum lycopersicum sly-MIR9477 precursor miRNA

Literature search

2 open access papers mention sly-MIR9477
(3 sentences)

Sequence

guuaaucuauugagggaguguauccgguuuuucgaauuuuauaucugaacuaucacuaaguguuuaucgacacacaccucaacUAUCCGUUGUUCCCUUUUCCUACCugaaugauggugauauucuaggUUGGGAAAGGGAACAACUGAUAGUugagguauguuucgauaaacauuuggugauaguucagguugggaacucggaaaaaggaauacuugaucuguguuuuugac
(((((..(((.((..((((((.(((..((((((((.((((..((((((((((((((((((((((((((((.(((.((((((((((((.(((((((((((((((.(((((((((.......))))).)))).))))))))))))))).)))))))))))).))).))))))))))))))))))))))))))))..)))).)))))))).)))))))))..)).)))...)))))

Structure

     -uc   u  gg      a   gg        a    au                            c   c            C               U    -     au 
guuaa   uau ga  gagugu ucc  uuuuucga uuuu  aucugaacuaucacuaaguguuuaucga aca accucaacUAUC GUUGUUCCCUUUUCC ACCu gaaug  g
|||||   ||| ||  |||||| |||  |||||||| ||||  |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||| |||||  g
caguu   gug cu  uucaua agg  aaaaggcu aagg  uggacuugauagugguuuacaaauagcu ugu uggaguUGAUAG CAACAAGGGAAAGGG Ugga cuuau  u
     uuu   u  ag      -   -a        c    gu                            u   a            U               U    u     ag 

Annotation confidence Not enough data

Genome context

chr6: 43739860-43740092 [+]

Mature sly-miR9477-5p

• Accession: MIMAT0035471
• Description: Solanum lycopersicum sly-miR9477-5p mature miRNA
• Sequence: 84 - UAUCCGUUGUUCCCUUUUCCUACC - 107
• Evidence: experimental ; Illumina [1]

Mature sly-miR9477-3p

• Accession: MIMAT0035472
• Description: Solanum lycopersicum sly-miR9477-3p mature miRNA
• Sequence: 130 - UUGGGAAAGGGAACAACUGAUAGU - 153
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739