miRBase entry: sly-MIR9478

Stem-loop sly-MIR9478


Accession
MI0029120
Description
Solanum lycopersicum sly-MIR9478 precursor miRNA


Sequence

uuauaaaagggauaagGCUUAAAUAUGUAGAUCGAACUuugagaaaagacucaucuaugucaucugguaaaguuugguguguaaugguuugaaugagccuuuucucgaacgaaaaugguguagaugaguuaaauuuuuaacggauuacauaauugagccuuuucucauagUUCGAUGACAUAUUUGAGCCUuuuuccaauuauaa
.(((((..((((.(((((((((((((((..((((((((.(((((((((.((((..(((((.(((((..(((((((((.((.((((.((((...((((......)))).....)))).)).)).))...)))))))))...))))).)))))..)))).))))))))).)))))))).))))))))))))))).))))..))))).

Structure
u     aa    u               AG        u         a    uc     c     -gu         --u  g  -  g    --gaa    cc 
 uauaa  ggga aagGCUUAAAUAUGU  AUCGAACU ugagaaaag cuca  uaugu aucug   aaaguuugg   gu ua au guuu     ugag  u
 |||||  |||| |||||||||||||||  |||||||| ||||||||| ||||  ||||| |||||   |||||||||   || || || ||||     ||||   
 auauu  ccuu uUCCGAGUUUAUACA  UAGCUUga acucuuuuc gagu  auaca uaggc   uuuuaaauu   ua au ug uaaa     gcuc  u
a     aa    u               -G        u         c    ua     u     aau         gag  g  g  g    agcaa    uu 


Annotation confidence Not enough data
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Genome context
chr11: 52996644-52996848 [+]

Database links

Mature sly-miR9478-5p

Accession MIMAT0035473
Description Solanum lycopersicum sly-miR9478-5p mature miRNA
Sequence 17 - GCUUAAAUAUGUAGAUCGAACU - 38
Evidence experimental
Illumina [1]

Mature sly-miR9478-3p

Accession MIMAT0035474
Description Solanum lycopersicum sly-miR9478-3p mature miRNA
Sequence 171 - UUCGAUGACAUAUUUGAGCCU - 191
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739