Stem-loop sequence sly-MIR169e

Accession

MI0029121 (change log)

Description

Solanum lycopersicum miR169e stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

16 open access papers mention sly-MIR169e
(47 sentences)

Stem-loop

   -a        -  c  u      auu         ucuauu    u   a          a      u     caaug   uuu   aa       u  au 
5'   ggaggaga gg cu acauga   agaagaguu      uguu agu gccaaggaug cuugcc uucau     ccu   gua  auggaaa ug  u
     |||||||| || || ||||||   |||||||||      |||| ||| |||||||||| |||||| |||||     |||   |||  ||||||| ||  a
3'   cuucuucu cc ga uguacu   ucuucucaa      acag uca cgguuucuac gaacgg gagua     ggg   uau  uaucuuu ac  c
   uc        a  u  u      guu         ------    u   g          -      u     --aaa   --u   gg       c  aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr8: 57585442-57585633 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000079D1D4_4081
• miRBase Tracker:MI0029121

Mature sequence sly-miR169e-5p

• Accession: MIMAT0035475
• Sequence: 47 - uagccaaggaugacuugccuuu - 68
• Evidence: experimental; Illumina [1]

Mature sequence sly-miR169e-3p

• Accession: MIMAT0035476
• Sequence: 132 - uggcaagcaucuuuggcgacu - 152
• Evidence: experimental; Illumina [1]

References

1. PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).