Stem-loop sequence sly-MIR390b

Accession

MI0029123 (change log)

Description

Solanum lycopersicum miR390b stem-loop

Gene family

MIPF0000101; MIR390

Literature search

15 open access papers mention sly-MIR390b
(50 sentences)

Stem-loop

             u    a          g         cau     -acu   uuc 
5' gcauggagaa cugu aagcucagga ggauagcgc   ggaug    caa   g
   |||||||||| |||| |||||||||| |||||||||   |||||    |||    
3' cguacuuuuu ggca uuugaguccu ccuaucgcg   ucuac    guu   a
             c    c          a         auu     acau   uuu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr9: 8388184-8388292 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000790EF9_4081
• miRBase Tracker:MI0029123

Mature sequence sly-miR390b-5p

• Accession: MIMAT0035479
• Sequence: 17 - aagcucaggagggauagcgcc - 37
• Evidence: experimental; Illumina [1]

Mature sequence sly-miR390b-3p

• Accession: MIMAT0035480
• Sequence: 75 - cgcuauccauccugaguuuca - 95
• Evidence: experimental; Illumina [1]

References

1. PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).