Stem-loop sly-MIR390b

Accession

MI0029123

Description

Solanum lycopersicum sly-MIR390b precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

15 open access papers mention sly-MIR390b
(54 sentences)

Sequence

gcauggagaaucuguaAAGCUCAGGAGGGAUAGCGCCauggaugacucaauucgauuuuuguacacaucuuuagCGCUAUCCAUCCUGAGUUUCAcggcuuuuucaugc
((((((((((.((((.((((((((((.(((((((((...(((((...(((........)))....)))))...))))))))).)))))))))).)))).))))))))))

Structure

          u    a          G         Cau     -acu   uuc 
gcauggagaa cugu AAGCUCAGGA GGAUAGCGC   ggaug    caa   g
|||||||||| |||| |||||||||| |||||||||   |||||    |||    
cguacuuuuu ggcA UUUGAGUCCU CCUAUCGCg   ucuac    guu   a
          c    C          A         auu     acau   uuu 

Annotation confidence Not enough data

Genome context

chr9: 8388184-8388292 [+]

Mature sly-miR390b-5p

• Accession: MIMAT0035479
• Description: Solanum lycopersicum sly-miR390b-5p mature miRNA
• Sequence: 17 - AAGCUCAGGAGGGAUAGCGCC - 37
• Evidence: experimental ; Illumina [1]

Mature sly-miR390b-3p

• Accession: MIMAT0035480
• Description: Solanum lycopersicum sly-miR390b-3p mature miRNA
• Sequence: 75 - CGCUAUCCAUCCUGAGUUUCA - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739