Stem-loop sequence sly-MIR396b

Accession

MI0029124 (change log)

Description

Solanum lycopersicum miR396b stem-loop

Gene family

MIPF0000047; MIR396

Literature search

20 open access papers mention sly-MIR396b
(113 sentences)

Stem-loop

   gaugacc      -----ua     gc                  a    cu  -uu   --       g     u    u 
5'        aagucc       gucau  uuuuccacagcuuucuug acuu  uc   gcu  aaauuuu aucuc aaau g
          ||||||       |||||  |||||||||||||||||| ||||  ||   |||  ||||||| ||||| |||| a
3'        uucagg       cggua  aaagggugucgaaagaac ugaa  ag   cga  uuuagag uagag uuua u
   ----uua      uuucgaa     ga                  c    --  uau   ag       -     u    a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr7: 2628748-2628897 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007928AD_4081
• miRBase Tracker:MI0029124

Mature sequence sly-miR396b

• Accession: MIMAT0035481
• Sequence: 25 - uuccacagcuuucuugaacuu - 45
• Evidence: experimental; Illumina [1]

References

1. PMID:24376253 "Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant" Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T J Exp Bot. 65:725-739(2014).