Stem-loop sly-MIR477

Accession

MI0029126

Description

Solanum lycopersicum sly-MIR477 precursor miRNA

Literature search

2 open access papers mention sly-MIR477
(2 sentences)

Sequence

agcuaggcauugcuuguUGUCUCUCCCUCAAGGGCUCCucuucaagauccuuauaaacaagaaagcaugagggggaggAGUUCUUGUAGGGUGAGACAACaagaaauuccuugcu
(((.(((.(((.(((((((((((.(((((((((((((((((......(((((((............)))))))))))))))))))).)))).))))))))))).))).))).)))

Structure

   u   c   g           U    -             ucaaga       aaaca 
agc agg auu cuuguUGUCUC CCCU CAAGGGCUCCucu      uccuuau     a
||| ||| ||| ||||||||||| |||| |||||||||||||      |||||||      
ucg ucc uaa gaaCAACAGAG GGGA GUUCUUGAggagg      gggagua     g
   u   u   a           U    U             ------       cgaaa 

Annotation confidence Not enough data

Genome context

chr10: 3641768-3641882 [-]

Mature sly-miR477-5p

• Accession: MIMAT0035483
• Description: Solanum lycopersicum sly-miR477-5p mature miRNA
• Sequence: 18 - UGUCUCUCCCUCAAGGGCUCC - 38
• Evidence: experimental ; Illumina [1]

Mature sly-miR477-3p

• Accession: MIMAT0035484
• Description: Solanum lycopersicum sly-miR477-3p mature miRNA
• Sequence: 79 - AGUUCUUGUAGGGUGAGACAAC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739