miRBase entry: bdi-MIR9488

Stem-loop bdi-MIR9488


Accession
MI0029137
Description
Brachypodium distachyon bdi-MIR9488 precursor miRNA


Sequence

cauUGAGGGCUAGGCUUUUAUGUAAcuacuguuugugguaauuguuuuucuaaaauccuaccuguuaauagcacugauugccccgcaaaauaucacuacacgucagaauugacaucagugcaacuugaaaccggauguuuuuugaaaagaacuaccaaaaccaguaguuauguaaaaccuauuccucaauguu
(((((((((.((((.((((((((((((((((.((.(((((.((.(((((..(((((((......((((..(((((((((((...)))..............((((....))))))))))))...))))....))))..)))..))))).)).))))).)).)))))))))))))))))))).)))))))))..

Structure
--         C    C                u  g     a  g     cu   --    uaccug    -ua        ugccccgcaaaauaucacuacac    g 
  cauUGAGGG UAGG UUUUAUGUAAcuacug uu uggua uu uuuuu  aaa  aucc      uuaa   gcacugau                       guca a
  ||||||||| |||| |||||||||||||||| || ||||| || |||||  |||  ||||      ||||   ||||||||                       ||||  
  guaacuccu aucc aaaauguauugaugac aa accau aa aaaag  uuu  uagg      aguu   cgugacua                       cagu a
uu         u    -                c  a     c  g     uu   ug    --ccaa    caa        -----------------------    u 


Annotation confidence Not enough data
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Genome context
1: 50046751-50046943 [-]

Database links

Mature bdi-miR9488

Accession MIMAT0035495
Description Brachypodium distachyon bdi-miR9488 mature miRNA
Sequence 4 - UGAGGGCUAGGCUUUUAUGUAA - 25
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145