miRBase entry: bdi-MIR9490

Stem-loop bdi-MIR9490


Accession
MI0029140
Description
Brachypodium distachyon bdi-MIR9490 precursor miRNA


Sequence

cuuagugcgAGGCCACACCCUAAUGGUCGUGCGggugucuugugaaaagccaaggcccacacggcuagaaggguguggcuuggcgcuaagcc
((((((((.((((((((((((..((((((((.((((..((((........)))))))).))))))))..)))))))))))).))))))))..

Structure
--        g            AA        C    gu    uga 
  cuuagugc AGGCCACACCCU  UGGUCGUG Gggu  cuug   a
  |||||||| ||||||||||||  |||||||| ||||  ||||    
  gaaucgcg uucgguguggga  aucggcac cccg  gaac   a
cc        g            ag        a    --    cga 


Annotation confidence Not enough data
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Genome context
3: 18715092-18715183 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR9490
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR9490

Accession MIMAT0035498
Description Brachypodium distachyon bdi-miR9490 mature miRNA
Sequence 10 - AGGCCACACCCUAAUGGUCGUGCG - 33
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145