miRBase entry: bdi-MIR169n

Stem-loop bdi-MIR169n


Accession
MI0029159
Description
Brachypodium distachyon bdi-MIR169n precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
3 open access papers mention bdi-MIR169n
(27 sentences)

Sequence

cugauucggUAGCCAAGGAUGACUUGCCUAaaugugucuauguaauucaucugaguuggcaugggaccguuaauuuuaggcaugucuuccuuggcuauucggagugcc
....(((((((((((((((.(((.((((((((((.(((((((((((((....))))).)))).))))))).....))))))).))).)))))))))).))))).....

Structure
-cuga     -          U   U       -----   u    -    -     a 
     uucgg UAGCCAAGGA GAC UGCCUAa     aug gucu augu aauuc u
     ||||| |||||||||| ||| |||||||     ||| |||| |||| |||||  
     aggcu aucgguuccu cug acggauu     ugc cagg uacg uugag c
ccgug     u          u   u       uuaau   -    g    g     u 


Annotation confidence Not enough data
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Genome context
1: 11346973-11347080 [-]

Database links

Mature bdi-miR169n

Accession MIMAT0035517
Description Brachypodium distachyon bdi-miR169n mature miRNA
Sequence 10 - UAGCCAAGGAUGACUUGCCUA - 30
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145