miRBase entry: bdi-MIR444c

Stem-loop bdi-MIR444c


Accession
MI0029166
Description
Brachypodium distachyon bdi-MIR444c precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
1 open access papers mention bdi-MIR444c
(3 sentences)

Sequence

uugaugcaagggguggugacaaacuugaggcagcaacugcauaucuugcaagaaaauuggguuucagagcauaccgaugauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUgcugccucccuuugccaa
.....((((((((.((((.(((.((((((((((((((((((((.((((((((((((((.(((..........)))...)))))))))))))).)))))))))))))))))))).))).)))).))))))))...

Structure
uugau        u    a   a                    u              --g   uuca 
     gcaagggg ggug caa cuugaggcagcaacugcaua cuugcaagaaaauu   ggu    g
     |||||||| |||| ||| |||||||||||||||||||| ||||||||||||||   |||     
     cguuuccc ccgu gUU GAACUCUGUUGUUGACGUgu gaacguucuuuuag   cca    a
--aac        u    c   C                    u              uag   uacg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bdi-miR444c

Accession MIMAT0035524
Description Brachypodium distachyon bdi-miR444c mature miRNA
Sequence 96 - UGCAGUUGUUGUCUCAAGCUU - 116
Evidence not_experimental

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145