Stem-loop bma-mir-5838-2

Accession

MI0029187

Description

Brugia malayi bma-mir-5838-2 precursor miRNA

Gene family

MIPF0002115; mir-5838

Literature search

1 open access papers mention bma-mir-5838-2
(3 sentences)

Sequence

aauaacaaauguccggcuacguugcuaaaccguaaaugcuccuaauguuuuuaauaauaaucuaUGAGUAUUUUCGGUUUCGCAUCcuagcaggaacaaauggcggau
.....((..(((((.((((.(.(((.((((((.((((((((.((.((((......))))...)).)))))))).)))))).))).).)))).)).)))..))......

Structure

-aauaa  aa   -  g    c u   u      u        c  --a    uu 
      ca  ugu cc gcua g ugc aaaccg aaaugcuc ua   uguu  u
      ||  ||| || |||| | ||| |||||| |||||||| ||   ||||   
      gu  aca gg cgau C ACG UUUGGC UUUAUGAG au   auaa  a
uaggcg  aa   a  a    c U   C      U        U  cua    ua 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold3308: 229-336 [-]

Mature bma-miR-5838-3p

• Accession: MIMAT0026336
• Description: Brugia malayi bma-miR-5838-3p mature miRNA
• Sequence: 65 - UGAGUAUUUUCGGUUUCGCAUC - 86
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4