Stem-loop bma-mir-5846-2

Accession

MI0029188

Description

Brugia malayi bma-mir-5846-2 precursor miRNA

Gene family

MIPF0002109; mir-5846

Sequence

auuugauaugagauggaaguggGUGGAUUCUAGCUUAUUGCUUAagcuuguaaauaggcacaaaguuauaguccacccacuuacaucucauuaaucucgaaaaaugugcc
....(((((((((((..((((((((((((.((((((..((((((..........))))))..)))))).))))))))))))..))))))))..)))..............

Structure

----------auuu   --        ga            C      AU      agcu 
              gau  augagaug  aguggGUGGAUU UAGCUU  UGCUUA    u
              |||  ||||||||  |||||||||||| ||||||  ||||||     
              cua  uacucuac  ucacccaccuga auugaa  acggau    g
ccguguaaaaagcu   au        au            u      ac      aaau 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold37: 251289-251398 [+]

Mature bma-miR-5846

• Accession: MIMAT0026344
• Description: Brugia malayi bma-miR-5846 mature miRNA
• Sequence: 23 - GUGGAUUCUAGCUUAUUGCUUA - 44
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4