miRBase entry: bma-mir-2f

Stem-loop bma-mir-2f


Accession
MI0029190
Description
Brugia malayi bma-mir-2f precursor miRNA

Literature search
3 open access papers mention bma-mir-2f
(31 sentences)

Sequence

ucucgaaagugcgagugacagcagccguaucgacugugacaugauguuugauuaucugucaUAUCACAAGCCCGAUACGACCAUcuguacuugugcuauucccgaa
((..(((((((((((((.(((....(((((((..(((((.(((((............))))).)))))....))))))).....))))))))))))).)))..)).

Structure
-  uc   -          a   -cagc       --ac     c     guuug 
 uc  gaa agugcgagug cag     cguaucg    uguga augau     a
 ||  ||| |||||||||| |||     |||||||    ||||| |||||      
 ag  cuu ucguguucau guc     GCAUAGC    ACACU Uacug     u
a  cc   a          -   UACCA       CCGA     A     ucuau 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold153: 23624-23729 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from bma-mir-2f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-2f

Accession MIMAT0037490
Description Brugia malayi bma-miR-2f mature miRNA
Sequence 62 - UAUCACAAGCCCGAUACGACCAU - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498