miRBase entry: ath-MIR826b

Stem-loop ath-MIR826b


Accession
MI0029231
Description
Arabidopsis thaliana ath-MIR826b precursor miRNA

Literature search
3 open access papers mention ath-MIR826b
(21 sentences)

Sequence

uaugagauaaucUGGUUUUGGACACGUGAAAAUuaacuuuucacagcagcaauaugauaugauuuucacguauccaaaaccggacuauaucaua
(((((.(((.((((((((((((.((((((((((((.....(((...........)))..)))))))))))).)))))))))))).))).)))))

Structure
     g   a            C            acuuu   cagc 
uauga aua ucUGGUUUUGGA ACGUGAAAAUua     uca    a
||||| ||| |||||||||||| ||||||||||||     |||    g
auacu uau aggccaaaaccu ugcacuuuuagu     agu    c
     a   c            a            ---au   auaa 


Annotation confidence Not enough data
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Comments
This sequence was named MIR5090 in [1], but is unrelated to the human mir-5090 sequence (MIR:MI0017979).

Genome context
chr4: 1340521-1340614 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR826b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR826b

Accession MIMAT0035543
Description Arabidopsis thaliana ath-miR826b mature miRNA
Sequence 13 - UGGUUUUGGACACGUGAAAAU - 33
Evidence not_experimental

References

  1. PubMed ID: 24367020
    Two young MicroRNAs originating from target duplication mediate nitrogen starvation adaptation via regulation of glucosinolate synthesis in Arabidopsis thaliana
    "He H, Liang G, Li Y, Wang F, Yu D"
    "Plant Physiol (2014) 164:853-865