miRBase entry: dvi-mir-9538

Stem-loop dvi-mir-9538

Accession

MI0029277

Description

Drosophila virilis dvi-mir-9538 precursor miRNA

Sequence

uauuaguucuugguuaaaAUUGUUCUGUCCGGUUGCUccucuguguauuggccaagAUGAGAUCAGUCAGAAUAAUUGAuacccuggacaaaaa
.....((((..(((...((((((((((.(.(((..(((.(((..((....))..))).)))))).).))))))))))...)))..)))).....

Structure

uauua    uu   uaa          U C   UG   c   gu  a 
     guuc  ggu   aAUUGUUCUG C GGU  CUc ucu  gu u
     ||||  |||   |||||||||| | |||  ||| |||  ||  
     cagg  cca   UUAAUAAGAC G CUA  GAG Aga  cg u
aaaaa    uc   uAG          U A   --   U   ac  g

Annotation confidence Not enough data

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Genome context

scaffold_12855: 6282625-6282718 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9538

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9538-5p

Accession	MIMAT0035618
Description	Drosophila virilis dvi-miR-9538-5p mature miRNA
Sequence	19 - AUUGUUCUGUCCGGUUGCU - 37
Evidence	experimental Illumina [1]

Mature dvi-miR-9538-3p

Accession	MIMAT0035619
Description	Drosophila virilis dvi-miR-9538-3p mature miRNA
Sequence	57 - AUGAGAUCAGUCAGAAUAAUUGA - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372