miRBase entry: dvi-mir-9540

Stem-loop dvi-mir-9540


Accession
MI0029279
Description
Drosophila virilis dvi-mir-9540 precursor miRNA


Sequence

ugguguuuacauuacaugaUUCGUACGUUACACUGAACAGauuucuacauuaaugaUCUGUUCAAUGGGAUGUGUGaauuauguguguaaaau
.....(((((((.(((((((((((((((..((.((((((((((...........)))))))))).))..))))))))))))))))))))))..

Structure
uggug       u               UA  C          ucua 
     uuuacau acaugaUUCGUACGU  CA UGAACAGauu    c
     ||||||| |||||||||||||||  || ||||||||||    a
     aaaugug uguauuaaGUGUGUA  GU ACUUGUCUag    u
---ua       -               GG  A          uaau 


Annotation confidence Not enough data
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Genome context
scaffold_12855: 6284791-6284883 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from dvi-mir-9540
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-9540-5p

Accession MIMAT0035622
Description Drosophila virilis dvi-miR-9540-5p mature miRNA
Sequence 20 - UUCGUACGUUACACUGAACAG - 40
Evidence experimental
Illumina [1-2]

Mature dvi-miR-9540-3p

Accession MIMAT0035623
Description Drosophila virilis dvi-miR-9540-3p mature miRNA
Sequence 57 - UCUGUUCAAUGGGAUGUGUG - 76
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250