miRBase entry: dvi-mir-9545

Stem-loop dvi-mir-9545


Accession
MI0029283
Description
Drosophila virilis dvi-mir-9545 precursor miRNA


Sequence

uggucgggucuuauggguUUAGGAUUGUGGCCUUUCAACGuuuuuguuuuuucauuaauaaacaUUGUCUGCGCCACAAUUCUAACcucauugggccccguuu
.....((((((.(((((.((((((((((((((...(((.(((..((((........))))))).)))...).))))))))))))).))))).)))))).....

Structure
ugguc      u     u             - UUU   C   uu    uuu 
     gggucu auggg UUAGGAUUGUGGC C   CAA Guu  uguu   u
     |||||| ||||| ||||||||||||| |   ||| |||  ||||    
     cccggg uacuc AAUCUUAACACCG G   GUU caa  auaa   c
uuugc      u     C             C UCU   a   --    uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_12970: 9429441-9429543 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from dvi-mir-9545
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-9545-5p

Accession MIMAT0035630
Description Drosophila virilis dvi-miR-9545-5p mature miRNA
Sequence 19 - UUAGGAUUGUGGCCUUUCAACG - 40
Evidence experimental
Illumina [1-2]

Mature dvi-miR-9545-3p

Accession MIMAT0035631
Description Drosophila virilis dvi-miR-9545-3p mature miRNA
Sequence 65 - UUGUCUGCGCCACAAUUCUAAC - 86
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250